Apply Mask
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Input
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Either:
1. Any 2D or 3D image or image set, to apply the mask on
2. A 2D or 3D image (not image set) with the same dimensions as all images in input 1, defining the mask

Or:
1. A single 2D or 3D image that has a mask attached (see "Edit Mask" in the context menu of the image)


Output
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A copy of the masked image or image set, if the **Create new image** flag is enabled

Description
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The mask provided in the second input is applied to the first input. The intensities of the input image are set to zero outside of the mask. A pixel is defined as inside the mask if the mask intensity value is above the **Threshold value** for the flag **Threshold above** set to true, and outside otherwise. If **Crop automatically** is enabled, the output image will be cropped to the bounding box of the masked voxels.